Program Advances: Credit goest to Zero3450.

Both Games- These secrets apply in both Gregar and Falzar. If you want to see the game specific secrets, then scroll down to the bottom of the page.

Secret Bosses

THIS APPLIES TO THE ENGLISH VERSION ONLY. THESE MAY BE DIFFERENT IN THE JAPANESE VERSION.

Bass BX
Defeat Bass SP , the go to Underground 2. He and beast MegaMan will be near where Colonel Ghost Data is.
Bass SP
Get all 200 Standard Chips, then go to the GraveYard, there will be a door that you need the mark of S to open. BassSP is inside.
G-Beast / F-Beast Megaman SP
Defeat Bass Sp. Then go to near where Colonel's ghost was. He and Bass BX will be there.
Gregar / Falzar SP
First get all chips. all PAs. and defeat Forte SP. Then go to where Gregar / Falzar normally is. He will be there.
Protoman FZ
Complete all 35 Requests on the Request BBS Then go to the school. Chaud will be in class 6-1.

Secret Icons

GIGA COMP" Icon
Get all 5 Giga Chips
"MEGA COMP" Icon
Get all 45 Mega Chips
"P.A. COMP" Icon
Use all 30 Program Advances
"STD COMP" Icon
Get all 200 Standard Chips
Beast Link Gate Icon
Defeat Bass / Forte SP at Graveyard Area 2 with all 5 Greiga Link Navis installed through their respective Navi Data Chips through a Beast Link Gate device
Protoman Icon
Finish all 35 missions. Then Defeat Blues [Protoman] FZ
Bass Icon
Defeat Bass SP
Greiga / Falzar Icon
Beat the game
Secret Icon
Get all 17 Secret Chips

Net Cafe Items - If you drink enough coffee at the net cafes, the navi who sells them to you will give you an item.

AntiSwrd *GreenArea2 Net Cafe
BugStop (Yellow NCP)CentralArea1 Net Cafe
HP MemorySkyArea1 Net Cafe

Gregar Specific

Giga Chips

Bass FDefeat Bass SP in Graveyard Area.
BigHook HReceive it from an E-Mail when you first enter Graveyard Area.
BugRSwrd VBuy it from a Bugfrag Dealer in Sky Area 1. It costs 100 Bugfrags.
ColForce Q Defeat Bass BX in Underground 2.
DeltaRay ZBuy it from the Punk navi in Graveyard Area for 30000 Zenny.

Falzar Specific

Giga Chips

BassAnly FDefeat Bass SP in Graveyard Area.
BugThunder VBuy it from a Bugfrag Dealer in Sky Area1 for 100 Bugfrags.
CrossDiv DBuy it from a Punk navi in Graveyard Area for 30000 Zenny.
HubBatch JDefeat Bass BX in Underground2.
MetrKnuk NReceive from E-Mail when you first enter Graveyard Area.